PFM families for JASPAR extended cores

Format:  
Index  Matrix1 (Factor name) Matrix2 (Factor name) etc.
aveS  minS

aveS = average similarity in family
minS = minimum similarity in family  

1 MA0062 (NRF-2)  MA0080 (SPI-1)  
0.74161 0.74161 

2 MA0062 (NRF-2)  MA0039 (Gklf)  
0.345061 0.345061 

3 MA0026 (E74A)  MA0028 (Elk-1)  
0.325623 0.325623 

4 MA0098 (c-ETS)  MA0081 (SPI-B)  MA0026 (E74A)  
0.2601033 0.0700649 

5 MA0020 (Dof2)  MA0021 (Dof3)  MA0053 (MNB1A)  MA0064 (PBF)  
0.782158166666667 0.546373 

6 MA0082 (SQUA)  MA0001 (AGL3)  
0.379383 0.379383 

7 MA0025 (E4BP4)  MA0043 (HLF)  
0.11797 0.11797 

8 MA0043 (HLF)  MA0032 (FREAC-3)  
0.0587848 0.0587848 

9 MA0096 (bZIP910)  MA0097 (bZIP911)  MA0018 (CREB)  
0.864168333333333 0.793067 

10 MA0105 (p50)  MA0056 (MZF_1-4)  
0.379234 0.379234 

11 MA0013 (Broad-complex_4)  MA0045 (HMG-IY)  
0.148599 0.148599 

12 MA0069 (Pax6)  MA0013 (Broad-complex_4)  
0.424092 0.424092 

13 MA0044 (HMG-1)  MA0010 (Broad-complex_1)  
0.0822031 0.0822031 

14 MA0005 (Agamous)  MA0010 (Broad-complex_1)  
0.0790161 0.0790161 

15 MA0010 (Broad-complex_1)  MA0084 (SRY)  
0.174015 0.174015 

16 MA0068 (Pax-4)  MA0022 (Dorsal_1)  
0.294584 0.294584 

17 MA0051 (Irf-2)  MA0050 (Irf-1)  
1 1 

18 MA0107 (p65)  MA0023 (Dorsal_2)  MA0061 (NF-kappaB)  MA0101 (c-REL)  
0.424329 0.143498 

19 MA0087 (Sox-5)  MA0077 (SOX-9)  MA0078 (SOX17)  
0.384166333333333 0.261356 

20 MA0104 (n-MYC)  MA0058 (Max)  MA0093 (USF)  MA0059 (Myc-Max)  MA0004 (ARNT)  
0.8616076 0.682588 

21 MA0110 (ATHB5)  MA0008 (Athb-1)  
0.0707005 0.0707005 

22 MA0054 (MYB.ph3)  MA0100 (c-MYB_1)  MA0034 (GAMYB)  
0.222705466666667 0.0826094 

23 MA0079 (SP1)  MA0014 (Bsap)  
0.24321 0.24321 

24 MA0079 (SP1)  MA0111 (Spz1)  
0.245065 0.245065 

25 MA0079 (SP1)  MA0003 (AP2alpha)  
0.183002 0.183002 

26 MA0079 (SP1)  MA0027 (EN-1)  
0.250711 0.250711 

27 MA0040 (HFH-1)  MA0030 (FREAC-2)  MA0031 (FREAC-4)  
0.717082333333333 0.562663 

28 MA0102 (cEBP)  MA0019 (Chop-cEBP)  
0.0727882 0.0727882 

29 MA0066 (PPARgamma)  MA0017 (COUP-TF)  MA0074 (RXR-VDR)  
0.413853333333333 0.153154 

30 MA0067 (Pax-2)  MA0099 (c-FOS)  
0.130199 0.130199 

31 MA0103 (deltaEF1)  MA0086 (Snail)  MA0009 (Brachyury)  
0.355844666666667 0.206966 

32 MA0088 (Staf)  MA0085 (SU_h)  
0.39263 0.39263 

33 MA0052 (MEF2)  MA0011 (Broad-complex_2)  
0.0757188 0.0757188 

34 MA0011 (Broad-complex_2)  MA0033 (FREAC-7)  
0.179075 0.179075 

35 MA0011 (Broad-complex_2)  MA0047 (HNF-3beta)  
0.119013 0.119013 

36 MA0071 (RORalfa-1)  MA0072 (RORalfa-2)  
1 1