Data Modifying Form for the Entry: M1107-1
Name of the Submitter:
Species:
abbreviation
Splicing Mechanism:
CA
cassette
ME
mutually exclusive exons
A3
alternative 3' splice site
A5
alternative 5' splice site
AE
alternative 3' exon with polyA
RI
retained intron
UU
other or unknown
Tissue:
abbreviation
Temporal (developmental) Regulation:
DE: yes / NO: no / UU: unknown
Sequence Information:
C: cDNA / G: genomic DNA / U: unknown
Promoter Use:
F: follows / D: different / U: unknown
Disease Involvement:
Y: yes / N: no / U: unknown
4 Digits Internal Number:
Name of the Gene:
suppressor of white abricot (SWAP) intron 1
Give the Full Reference, Including Title:
@88166654 Chou, T.B., Zachar, Z., and Bingham, P.M., Developmental expression of a regulatory gene is programmed at the level of splicing. EMBO J., 1987. 6: p. 4095-4104.
Expression Pattern (e.g., expressed in muscle):
nd
Regulatory Features (e.g., encodes stop codon, phosphorylation):
stop codon
Temporal Regulation:
intron retained after blastoderm regulation
Technique Used to Determine the Expression Pattern:
protection, cloning
Accession number of the exon:
Genomic or cDNA?:
Give 12 nucleotides of the 3' splice site:
Give the Sequence of the Alternatively-spliced Exon:
Reading Frame:
unknown
1st
2nd
3rd
gttaataatt gggactaacc cgagcaataa ttatacgatt aatcagtacg cacaccactg ccacaaacac acacacacag ccacataccc accaatgtcg tgtcccgtta ggaccacact cccacacaca gcagcggtca aattgttagc agagtcagat acatacatat atgtaggtat tgtgatcgat ggtattgtga ttatggcgtt agaagaccga gcttgtcgct atttatagcc ctattttgca taatctaaac agaactgaat taatttctat ttgataaaat cgagaagagg attttctgaa aaggatcaaa ctgatcgtct gagtagatat tctaacattt gttgtaataa ttcaagactg cgaactgcag acacacaccc atctattcat ccgcccacac aaccaaaaca cacacgcaca cacaccattg taataacagc tcttttcagt gcttctcaaa ctgtaatctc tatccatata caatttgaaa actgtaattc tttgcccact ttaaatgtaa tccgattaac tttttagcca ccggagcggt atgtatacga acgatctcta gccttaaaac ctaatcttat ctgaaactgc attatatata ctatataccg tatgactatc aatattgtgt aaatgcgcga gagtgtgcga agcaaatggg acgattttca aggagcggcc ctgcctcccg tttgtttcgc ccgtcccgtt tcgcgtcgcc ccccaaaatt gccacaccca ctgacaatgc ttctccctcc tctctgttta tatttctctg cttgctttct ttcggctccg caaacaccat tgccattgcg attaccgtga ccacag
Give 6 nucleotides of the 5' splice site:
Give the Sequence (or accession number) of the 5' Common Exon:
Reading Frame:
unknown
1st
2nd
3rd
ATGCTGCCCT ACAATGTGCG AAACGCCGGT GGCGGAAGCG TTGGCGGAAT CCTGCGGCGC ACGGGCCAAG GTTCGGGCAC CGGAAGCACG ATTCTTGGCA ATGGAAACAG TCCGGGAGCA CTAGGAGCCG GAAAAGTGTC CTCCTCCAGC CTGGAAAACC ACAGACAACC GCCGTTGGAA CTCCTCGTGT TTGGCTACGC CTGCAAGATT TTCCGCGATG ACGAGAAGGC GCGGGAAATG GACCACGGCA AGCAGTTGAT TCCCTGGATG GGCGATGTAA ATCTCAAGAT TGACAG
Give the Sequence (or accession number) of the 3' Common Exon:
Reading Frame:
unknown
1st
2nd
3rd
ATACGATGTG CGTGGAGCCC TCTGCGAACT GGCACCGCAC GAGGCGCCAC CAGGCGGATA CGGTAACCGG CTGGAGTACT TGAGTGCCGA GGAGCAGCGC GCCGAGCAGC TGTGCGAGGA GGAGCGGTAC CTGTTTCTGT ACAATAACGA GGAGGAGCTG CGACTGCGAC AAG
Disease or Abnormal Processing Described?:
na
Comments:
complete structure known, splicing regualted by autoregulation
Revision (will be updated automatically!):
created on Apr 18, 1998
To submit the data, press this button:
To clear the form, press this button:
Go to
Alternative Splicing Database Home Page
nakai@imcb.osaka-u.ac.jp