Data Modifying Form for the Entry: m0024
Name of the Submitter:
Species:
abbreviation
Splicing Mechanism:
CA
cassette
ME
mutually exclusive exons
A3
alternative 3' splice site
A5
alternative 5' splice site
AE
alternative 3' exon with polyA
RI
retained intron
UU
other or unknown
Tissue:
abbreviation
Temporal (developmental) Regulation:
DE: yes / NO: no / UU: unknown
Sequence Information:
C: cDNA / G: genomic DNA / U: unknown
Promoter Use:
F: follows / D: different / U: unknown
Disease Involvement:
Y: yes / N: no / U: unknown
4 Digits Internal Number:
Name of the Gene:
PAX3 gene, pax 3b
Give the Full Reference, Including Title:
@87192945 Tsukamoto, K., Nakamura, Y. and Niikawa, N. (1994) Isolation of two isoforms of the PAX3 gene transcripts and their tissue-specific alternative expression in human adult tissues. Hum Genet 93(3): 270-4.
Expression Pattern (e.g., expressed in muscle):
only in cerebellum, esophagus, and skeletal muscle
Regulatory Features (e.g., encodes stop codon, phosphorylation):
changes C-terminus
Temporal Regulation:
nd
Technique Used to Determine the Expression Pattern:
PCR and cloning
Accession number of the exon:
Genomic or cDNA?:
Give 12 nucleotides of the 3' splice site:
Give the Sequence of the Alternatively-spliced Exon:
Reading Frame:
unknown
1st
2nd
3rd
gtaagcggtg gcgccttggg cggcgcactt gctgggtgac ttggagggca tcggctagct gacattggtg atctgacggc agccaagccc agctcggatc aaggtccctt catgcgcggt gtctctgcgc ctgagtaacg acatggaact gaaagaccag aggacactag gaatcaaaac aaacatttct attctgctta gtttttctgt tttgtaaatc tttctttctt accactttca gcccctggga ttctagaact gtgaattgtg ctctgttgta gggggcaggg gaagctctca ctctgttgcc attaaatgta tgagactggg catctctgag caattgtagg gcctgggata gagggtactt gaatcttcag aagttgaagt agcttttatg ccctcag
Give 6 nucleotides of the 5' splice site:
Give the Sequence (or accession number) of the 5' Common Exon:
Reading Frame:
unknown
1st
2nd
3rd
tgagttccat cagccgcatc ctgagaagta aattcgggaa aggtgaagag gaggaggccg acttggagag gaaggaggca gaggaaagcg agaagaaggc caaacacagc atcgacggca tcctgagcga gcgag
Give the Sequence (or accession number) of the 3' Common Exon:
Reading Frame:
unknown
1st
2nd
3rd
gaaaggccct ggtctccgga gtttcctcgc attaaaggag agagagagta ctcttttggg caacggccct ccaaaattgc ccccacattg gctgccttat aaatatgtct gtgtgttgac tggt
Disease or Abnormal Processing Described?:
nd
Comments:
na
Revision (will be updated automatically!):
created on 970618
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Alternative Splicing Database Home Page
nakai@imcb.osaka-u.ac.jp