Data Modifying Form for the Entry: m0383
Name of the Submitter:
Species:
abbreviation
Splicing Mechanism:
CA
cassette
ME
mutually exclusive exons
A3
alternative 3' splice site
A5
alternative 5' splice site
AE
alternative 3' exon with polyA
RI
retained intron
UU
other or unknown
Tissue:
abbreviation
Temporal (developmental) Regulation:
DE: yes / NO: no / UU: unknown
Sequence Information:
C: cDNA / G: genomic DNA / U: unknown
Promoter Use:
F: follows / D: different / U: unknown
Disease Involvement:
Y: yes / N: no / U: unknown
4 Digits Internal Number:
Name of the Gene:
endothelial thromboxane A2 receptor (human), alternative exon
Give the Full Reference, Including Title:
@94308201 Raychowdhury, M.K., Yukawa, M., Collins, L.J., McGrail, S.H., Kent, K.C., and Ware, J.A., Alternative splicing produces a divergent cytoplasmic tail in the human endothelial thromboxane A2 receptor [published erratum appears in J Biol Chem 1995 Mar 24;270(12):7011]. J Biol Chem, 1994. 269: p. 19256-61.
Expression Pattern (e.g., expressed in muscle):
nd
Regulatory Features (e.g., encodes stop codon, phosphorylation):
stop codon
Temporal Regulation:
nd
Technique Used to Determine the Expression Pattern:
PCR and cloning
Accession number of the exon:
Genomic or cDNA?:
Give 12 nucleotides of the 3' splice site:
Give the Sequence of the Alternatively-spliced Exon:
Reading Frame:
unknown
1st
2nd
3rd
GTCGCTGTCC CTCCAGCCCC AGCTCACGCA GCGCTCCGGG CTGCAGTAGg aagtggacag agcgcccctc ccgcgccttt ccgcggagcc cttggcccct cggacagccc atctgcctgt tctgaggatt caggggctgg gggtgctgga tggacagtgg gcatcagcag cagggttttg ggttgacccc aatccaaccc ggggaccccc aactcctccc tgatcccttt accaagcact ctcccttcct cggccccttt ttcccatcca gagctcccac cccttctctg cgtccctccc aaccccagga agggcatgca gacattggaa gagggtcttg cattgctatt ttttttttta g
Give 6 nucleotides of the 5' splice site:
Give the Sequence (or accession number) of the 5' Common Exon:
Reading Frame:
unknown
1st
2nd
3rd
CTTCATTGCC CAGACAGTGC TGCGAAACCC GCCTGCCATG AGCCCCGCCG GGCAGCTGTC CCGCACCACG GAGAAGGAGC TGCTCATCTA CTTGCGCGTG GCCACCTGGA ACCAGATCCT GGACCCCTGG GTGTATATCC TGTTCCGCCG CGCCGTGCTC CGGCGTCTCC AGCCTCGCCT CAGCACCCGG CCCAG
Give the Sequence (or accession number) of the 3' Common Exon:
Reading Frame:
unknown
1st
2nd
3rd
ACGGCGTCTT GCTCTGTCCC CCAGGCTGGA GTGCAGTGGC GCAATCTCAG CTCACTGCAA CCTCCACCTC CCGGGTTCAA GCCATTCTCC TGCCTCAGCC TCCTGAGTAG CTGGGACTAT AGGCGCGCGC CACCACGCCC GGCTAATTTT TGTATTTTTA GTAGAGACGG TGTTTCACCG TGTTGGCCAG GCTGGTCTTG AACTCCTGAC CTCAGGTGAT TCACCAGCCT CAGCCTCCCA AAGTGCTGGG ATCACAGGCA TGAACCACCA CACCTGGCCA TTTTTTTTTT TTTTTTAGAC GGAGTCTCAC TCTGTGGCCC AGCCTGGAGT ACAGTGGCAC GATCTCGGCT CACTGCAACC TCCGCCTCCC GGGTTCAAGC GATTCTCGTG CCTCAGCCTC CCGAGCAGCT GGGATTACAG GCGTAA
Disease or Abnormal Processing Described?:
Comments:
Revision (will be updated automatically!):
created on 971128
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Alternative Splicing Database Home Page
nakai@imcb.osaka-u.ac.jp