Data Modifying Form for the Entry: m0804
Name of the Submitter:
Species:
abbreviation
Splicing Mechanism:
CA
cassette
ME
mutually exclusive exons
A3
alternative 3' splice site
A5
alternative 5' splice site
AE
alternative 3' exon with polyA
RI
retained intron
UU
other or unknown
Tissue:
abbreviation
Temporal (developmental) Regulation:
DE: yes / NO: no / UU: unknown
Sequence Information:
C: cDNA / G: genomic DNA / U: unknown
Promoter Use:
F: follows / D: different / U: unknown
Disease Involvement:
Y: yes / N: no / U: unknown
4 Digits Internal Number:
Name of the Gene:
extracellular matrix protein 1, Ecm1, alternative spliced form
Give the Full Reference, Including Title:
@95332352 Bhalerao, J., Tylzanowski, P., Filie, J.D., Kozak, C.A., and Merregaert, J., Molecular cloning, characterization, and genetic mapping of the cDNA coding for a novel secretory protein of mouse. Demonstration of alternative splicing in skin and cartilage. J Biol Chem, 1995. 270: p. 16385-94.
Expression Pattern (e.g., expressed in muscle):
exon partially skipped in fron paw, tail and skin, exon always ued in liver and lung
Regulatory Features (e.g., encodes stop codon, phosphorylation):
changes the pattern of cys residues
Temporal Regulation:
nd
Technique Used to Determine the Expression Pattern:
northern blot
Accession number of the exon:
Genomic or cDNA?:
Give 12 nucleotides of the 3' splice site:
Give the Sequence of the Alternatively-spliced Exon:
Reading Frame:
unknown
1st
2nd
3rd
tgggaggatg caatgaccca attttgtgag gccgaattct ctgtcaagac ccgcccccac ctgtgctgca gactgcgtgg ggaggagcga ttctcttgct tccagaagga agctcctcgc ccagactacc tgctccgacc ctgccccgtc caccagaatg gcatgtcctc agggccccag ttgcctttcc ccccggggtt gcccacaccg gacaatgtca aaaacatctg tctcctgaga cgcttccgcg ccgtgccacg caacctccca gctactgacg ccatccagag gcagctgcag gctctgactc ggctggagac ggagttccag cgctgctgcc gccagggcca caaccacact tgcacatgga aggcc
Give 6 nucleotides of the 5' splice site:
Give the Sequence (or accession number) of the 5' Common Exon:
Reading Frame:
unknown
1st
2nd
3rd
ggagagaccc tcaatgtgct ggagaccgga tactcccgct gctgtccgtg ccgcagcgac acaaaccgcc tagactgttt gaagcttgtg
Give the Sequence (or accession number) of the 3' Common Exon:
Reading Frame:
unknown
1st
2nd
3rd
tgggagggta ccctggatgg atactgcgag cgggagctgg ctataaagac ccacccccac tcgtgctgcc actaccctcc tagtcctgcc cgtgatgagt gcttcgccca cctagctccc tatcccaact atgaccggga
Disease or Abnormal Processing Described?:
nd
Comments:
Revision (will be updated automatically!):
This comment is added on 970314
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Alternative Splicing Database Home Page
nakai@imcb.osaka-u.ac.jp