Data Modifying Form for the Entry: m1003
Name of the Submitter:
Species:
abbreviation
Splicing Mechanism:
CA
cassette
ME
mutually exclusive exons
A3
alternative 3' splice site
A5
alternative 5' splice site
AE
alternative 3' exon with polyA
RI
retained intron
UU
other or unknown
Tissue:
abbreviation
Temporal (developmental) Regulation:
DE: yes / NO: no / UU: unknown
Sequence Information:
C: cDNA / G: genomic DNA / U: unknown
Promoter Use:
F: follows / D: different / U: unknown
Disease Involvement:
Y: yes / N: no / U: unknown
4 Digits Internal Number:
Name of the Gene:
STEP 20 (striatal enriched phosphatase 20)
Give the Full Reference, Including Title:
@96115113 Sharma, E., Zhao, F., Bult, A. and Lombroso, P.J. (1995) Identification of two alternatively spliced transcripts of STEP: a subfamily of brain-enriched protein tyrosine phosphatases. Molec. Brain Res. 32: 87-93.
Expression Pattern (e.g., expressed in muscle):
brain
Regulatory Features (e.g., encodes stop codon, phosphorylation):
introduces stop codon, truncated form no longer active
Temporal Regulation:
nd
Technique Used to Determine the Expression Pattern:
cloning
Accession number of the exon:
Genomic or cDNA?:
Give 12 nucleotides of the 3' splice site:
Give the Sequence of the Alternatively-spliced Exon:
Reading Frame:
unknown
1st
2nd
3rd
gtatgtagct ccatcccaag agccttccac taaaggagag gcctgagctg atgcaatctg tccttcagac ttgtccccca agccagtgtg gctcctacaa gccccaagag gagcctaagt gtgggatggg gccctgggag tgccacctcc acccctgacc tgacgggctg gacttgggtg gctgcag
Give 6 nucleotides of the 5' splice site:
Give the Sequence (or accession number) of the 5' Common Exon:
Reading Frame:
unknown
1st
2nd
3rd
atcctcacag cagggtacgt ctgacgtcac cagaccctga agatcctctg agttcctaca tcaatgccaa ctacatccgg
Give the Sequence (or accession number) of the 3' Common Exon:
Reading Frame:
unknown
1st
2nd
3rd
ggctacagtg gggaggagaa ggtgtacatc gccacgcagg gacccatcgt cagcactgtg gccgactttt ggcgcatggt gtggcaggag cgcacaccca tcat
Disease or Abnormal Processing Described?:
na
Comments:
complete gene structure known
Revision (will be updated automatically!):
created on 970618
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Alternative Splicing Database Home Page
nakai@imcb.osaka-u.ac.jp