CREAD

Examples of how to use CREAD tools

Many examples can be found in the man pages. This page will be updated with additional examples.

formattable examples

Example files

This File may be used to try the examples below

example.faa

Example 1

formattable -o example.tab example.faa
Produces a gk-table for the sequences in example.faa, tabulating all 6-mers in the format of 3-mer-gap-3-mer with a maximum gap size of 5.

Example 2

formattable -w 8 -i 6 -t 4 -o example.tab \
example.faa
Produces a gk-table for the sequences in example.faa, tabulating all 8-mers in the format of 4-mer-gap-4-mer with a maximum gap size of 6.

Questions or comments? Contact Andrew Smith. Last updated: Sunday October 22, 2006