Collection of Exon Enhancer Motifs


GAGGAAGA
exon enhancer of troponin T alternative exon, 
interacts with pSRp30a, 40,55,75
described in:
Ramchatesingh, J., Zahler, A.M., Neugebauer, K.A., Roth, M.B., and Cooper,
T.A., A subset of SR proteins activates splicing of the cardiac troponin T
alternative exon by direct interactions with an exonic enhancer. Mol. Cell.
Biol., 1995. 15: p. 4898-4907.


TCTTCAATCAACA
dsx repeat


Binding Consensus for SR Proteins

This was from the '94 RNA processing meeting.

-Roland Tacke, Yan Chen and James Manley

X16  deltaRS  - T A/T C T A C A A

SC35  deltaRS - A G C/G A G A G T A
      native  - G T T C G A G T A

ASF RBD1  - A C G C G C A

ASF deltaRS   -   A/G G A A G A A C  }
    native    - A G G A C A G A G C }

-Volker Heinrichs and Bruce Baker

RBP1 = X16 = SRp20
          - A T/G C A T G/A C T T T A
          - A T C T/C N N A


last update: 13 March, 1997