TCat: known motifs for Mouse SkeletalMuscle

Sites for motif Ske.Mm.T00014 in promoters of SkeletalMuscle-specific transcripts in Mouse.Legend

Sites

Transcript

Gene

Votes

Sequence

Location

Strand

FD

NM_153153

Svil

3

CCGAGGTGAC

CCGGGGTGCC

CTCACCTCCG

CCGACCCGGC

CCGGCCTGGG

CCCAGGCCGG

CTGGCCTGGC

CCCGCCCGCC

CCGGCGCGGC

-255
-209
-149
-50
-45
-45
2
79
86

n

p

n

p

p

n

p

p

n

0.939
0.933
0.948
0.960
0.977
0.933
0.957
0.948
0.934

NM_146189

Mybpc2

3

CCGGCCTCAG

CCCGCCCCGC

CCCAGCCCCC

-589

-486

-455

n

p

p

0.938

0.944

0.929

NM_033268

Actn2

3

CCGAGGTGCC

CCCAGCCGCC

-531

-27

p

p

0.942

0.950

NM_021883

Tmod1

3

CCCAGCCCCG

CTGGGGTGGC

CCCAGGCCGG

CCGGCCTGGG

CCCGCCCCCG

CCCACCCGCG

CCCGCCCGCC

-170

-165

-129

-129

-30

-16

76

n

p

p

n

p

p

p

0.933

0.933

0.933

0.977

0.932

0.961

0.948

NM_016754

Mylpf

3

CTCACCTCAC

CCCACCCCAC

CTGAGCTGGG

CCCAGCTCAG

CTGGGGTGGG

CCCACCCCAG

-464

-323

-111

-111

-89

-89

p

p

p

n

p

n

0.941

0.935

0.962

0.953

0.936

0.938

NM_016749

Mybph

3

CTGGCCTGAG

CTGGCCTGGG

CTGACCTGAC

-553

-138

-102

n

p

p

0.942

0.960

0.947

NM_013456

Actn3

3

CCGAGCTGCC

CCCGGCTCAG

CTGAGCCGGG

CCGGCCTGAG

-878

-539

-539

-21

p

p

n

p

0.958

0.944

0.939

0.958

NM_011620

Tnnt3

3

CCGAGGTGGC

-400

n

0.958

NM_010867

Myom1

3

CTGGGCTGCC

-206

n

0.933

NM_009394

Tnnc2

3

CCCACCCCAC

-273

n

0.935

NM_173021

Phka1

2

CCCAGCTCCC

CCCGCCCCCG

CCCGGGTGCC

CCCGGGTGGC

-418

-67

-38

51

n

p

n

n

0.952

0.932

0.947

0.963

NM_172992

Phtf2

2

CCGAGCTCCC

CTCAGCTGCG

-570

-396

p

n

0.938

0.960

NM_153786

Vgll2

2

CCCAGCCCAG

CTGGGCTGGG

67

67

p

n

0.930

0.952

NM_153064

Ndufs2

2

CCCGCGCGCC

-35

n

0.932

NM_146165

Jtv1

2

CCCGCCTCGC

CTCACCTCAC

CTGAGGTGGC

-356

-267

34

p

p

p

0.967

0.941

0.942

NM_145999

Rhot2

2

CTGGCCTGAG

CCCGCCTGCC

CCGGCCCGGC

CCGGGCCGGG

CCCGGCCCGG

CCGGCCCGGC

CCGGGCCGGG

CCCGGCCCGG

-223
-139
17
18
18
22
23
23

p

n

n

p

n

n

p

n

0.942
0.971
0.950
0.946
0.940
0.950
0.946
0.940

NM_145533

Smox

2

CCCACCTGAG

CTCAGGTGGG

CTGAGGTGGG

CCCACCTCAG

CCCGCCCCCG

CCCAGGCGGG

CCCGCCTGGG

CCCACCCCGC

CCGGGCTCCG

-380
-380
-294
-294
-117
-84
-84
-79
75

p

n

p

n

p

p

n

n

p

0.981
0.959
0.945
0.961
0.932
0.953
0.991
0.953
0.933

NM_145521

D830019K17Rik

2

CCCGGCTCCG

CTGGGCTGGG

CCCAGCCCAG

-61

52

52

n

p

n

0.947

0.952

0.930

NM_145463

9430059P22Rik

2

CCCGGCTGCG

CTCGCCTGGC

CTGGCCCGGC

CCCGGCTGGC

CCCGCCCGGC

-544

-510

-346

-311

-307

n

n

p

n

n

0.967

0.971

0.934

0.979

0.964

NM_145420

Ube2d1

2

CCCGCCTGGC

CCCGCCCGCC

CCGGGCTGCC

-74

-70

61

n

n

n

0.987

0.948

0.949

NM_144534

Tmem38a

2

CCCGGCTCAG

CTGAGCCGGG

CTGGGCTGGG

CCCAGCCCAG

CCCGCCTCCC

CCCGCCTGCC

-706

-706

-494

-494

-396

-95

p

n

p

n

n

n

0.944

0.939

0.952

0.930

0.951

0.971

NM_139117

Csda

2

CTCGCCCGGG

CCCGGGTGCC

CCCGCCCCGC

CCCGCGTCCG

CCCGCCCGCC

-159

-155

-45

-40

-26

p

p

p

p

p

0.952

0.947

0.944

0.938

0.948

NM_138664

ORF28

2

CTGACCTCAG

-183

n

0.931

NM_133667

Pdk2

2

CCGACGTCGC

CCGAGCTGAC

-116

-11

n

p

0.946

0.956

NM_133201

Mfn2

2

CCCGCGTGCC

CCGGCCTCGC

CCGGCCCGGG

CCGGGCCGGG

CCCGGCCCGG

-168

26

85

86

86

n

n

n

p

n

0.955

0.953

0.954

0.946

0.940

NM_080856

Asb14

2

CCGGGCTGCC

CTGGCCTGCC

-742

-192

p

n

0.949

0.941

NM_054085

Alpk3

2

CCGGCCCGCG

CCCGGCCCGC

CCCAGCCCCG

47

48

54

n

n

n

0.938

0.936

0.933

NM_053252

LOC114601

2

CCCACCCCAG

CTGGGGTGGG

CCCGCCCCGC

CCCGCCCGCC

CCCGCGTCCG

-383

-383

-62

-44

-32

p

n

p

p

n

0.938

0.936

0.944

0.948

0.938

NM_033270

E2f6

2

CCCACCCCCC

-134

p

0.937

NM_031173

Cacnb1

2

CTGACCTGCC

CCCGGCTGGG

CCCAGCCGGG

CCCACCCCCC

CCCGCCCCGC

CCCGGCTCGC

-903

-518

-518

-281

-59

40

p

p

n

p

n

n

0.950

0.983

0.969

0.937

0.944

0.959

NM_029344

Acyp2

2

CCCACCCCCC

CCCACCCCAC

CCCACCCCCC

CCGACCTCCG

-997

-992

-861

-222

n

n

p

p

0.937

0.935

0.937

0.950

NM_029095

1110011D13Rik

2

CTCACGTGCG

CCCAGGTGCC

CCCACCTCCG

CTGAGGTGGG

CCCACCTCAG

-851

-307

-55

78

78

n

p

p

p

n

0.952

0.956

0.964

0.945

0.961

NM_028283

Uaca

2

CCCACCCCAG

CTGGGGTGGG

CCCAGGTGGC

CCCACCTGCC

-78

-78

-10

-3

p

n

p

n

0.938

0.936

0.972

0.981

NM_027799

5530600A18Rik

2

CTCAGGTGCC

CCCGCCCGCC

CCCGCCCGCC

CCCGCCCCCG

CCCGCCCCGC

CCCGCCCCGC

CCCACCCGGC

CCCGGCCGGC

CCCACCCGCG

CCCGCCCGCC

CTGGGCCGGG

CCCGCCCCGC

CTCGCCCGCC

CCGGGCTCGC

-986
-803
-799
-795
-789
-784
-280
-211
-191
-57
-36
-9
-5
0

n

p

p

p

p

p

n

n

n

n

p

n

n

n

0.940
0.948
0.948
0.932
0.944
0.944
0.974
0.956
0.961
0.948
0.930
0.944
0.932
0.945

NM_027126

Hfe2

2

CCCACCCCCG

CCCACCCCCC

CCCAGCTCAC

CTCAGGTGGC

CCCGCCCCCG

CCCGGCCCGG

CCGGGCCGGG

CCGGCCCGGG

CCGGCCCCGG

CTGGCCCGGC

CCCAGCTCCC

-962
-929
-601
-481
-328
-322
-322
-321
-299
-294
45

n

n

p

p

p

p

n

p

n

n

p

0.941
0.937
0.949
0.956
0.932
0.940
0.946
0.954
0.934
0.934
0.952

NM_027109

Dnase1l1

2

CCCACCCCGC

-120

n

0.953

NM_026738

1110007C09Rik

2

CCGACCCGGG

CCCGGGTCGG

CCGGCGTCGC

CCGAGCCGCC

-353

-353

-215

-134

p

n

p

p

0.963

0.946

0.937

0.936

NM_026673

0610008C08Rik

2

CCGGCGCGGC

CCCGCGCGCG

-355

-212

p

p

0.934

0.936

NM_026509

2310039E09Rik

2

CCGGCCCCGG

-128

p

0.934

NM_026270

Akt1s1

2

CCCGCCTCGC

-594

p

0.967

NM_026120

2410127L17Rik

2

CCCAGCTGAC

CCCGGCTCCC

CCCGCCTGCG

-130

28

41

p

n

n

0.970

0.943

0.975

NM_026017

Dullard

2

CTCACCTCGC

CCCGCCCCGC

CTGACCTCGG

CCCGCCCGCC

-959

-547

-275

-142

p

p

p

p

0.960

0.944

0.949

0.948

NM_025985

Ube2g1

2

CCCAGGTCCC

CCCAGCTGCG

CCCGCCTCCG

CCGGCCTCCC

-722

-282

-206

83

n

n

n

p

0.936

0.976

0.955

0.937

NM_025535

Sara2

2

CCGGGCTGCC

CTCACCTGCG

-263

80

n

n

0.949

0.968

NM_025508

Gmpr

2

CTCACCTCCC

CTGAGCTGCG

CTGGGCTGAG

CCCAGGTCAG

CTGACCTGGG

CCGGGGCGGG

CCCGCCCCGG

CTCAGCTCAG

CTGAGCTGAG

CCCGCCCCCG

CCCAGCTCCG

-756
-177
-172
-167
-167
-70
-70
-59
-59
-19
22

n

n

n

p

n

p

n

p

n

n

n

0.944
0.946
0.934
0.937
0.970
0.930
0.948
0.937
0.943
0.932
0.956

NM_025434

Mrps28

2

CTCGCCTGGG

CCCAGGCGAG

CCCACGCCGG

CCGGCGTGGG

-75

-75

36

36

p

n

p

n

0.975

0.934

0.941

0.961

NM_025357

Smpx

2

CCCAGCTGGC

-661

p

0.988

NM_024176

Drap1

2

CCCGGCTCCG

CCCACCCGCC

CTCGCCCGCC

CCGGGCTCGC

-352

-55

-42

-37

p

n

n

n

0.947

0.958

0.932

0.945

NM_023049

Asb2

2

CCCGGCTCGC

CCGGCCCGCG

-102

28

p

p

0.959

0.938

NM_022314

Tpm3

2

CCCAGCCCGC

CCCGGGTGGC

-790

-28

n

p

0.945

0.963

NM_021515

Ak1

2

CTCAGGTGGC

CCCGGCTCCC

CTCAGCCGCC

CCCAGGTCAG

CTGACCTGGG

-684

-111

-7

49

49

p

p

n

p

n

0.956

0.943

0.933

0.937

0.970

NM_021514

Pfkm

2

CCCAGCTCAC

CCCACCTCAC

-718

88

n

n

0.949

0.957

NM_021430

2900002H16Rik

2

CCCGGCTCCG

CCCGCCTCCC

CCCGGCTCCG

CCCACGTCGC

CCGGGCCGCG

CCCAGGCCGG

CCGGCCTGGG

-371

-363

-351

-267

-172

-133

-133

n

n

n

p

p

p

n

0.947

0.951

0.947

0.960

0.930

0.933

0.977

NM_019874

Dnajb5

2

CTGAGCTGAG

CTCAGCTCAG

CCCGGCTCCG

-51

-51

76

p

n

n

0.943

0.937

0.947

NM_019765

Rsn

2

CCCAGGTGGG

CCCACCTGGG

-371

-371

p

n

0.976

1.000

NM_018748

Golga4

2

CTGGCCTCGG

50

n

0.940

NM_016872

Vamp5

2

CCCAGCTGAC

CTGGCCTGAC

-619

-508

p

p

0.970

0.938

NM_016798

Pdlim3

2

CCCAGCTGGG

CCCAGCTGGG

-115

-115

p

n

0.992

0.992

NM_016712

Tmod4

2

CCCACCTGGC

CTCACCTCCC

-68

57

p

n

0.996

0.944

NM_015825

Sh3bgr

2

CTGACCTGGC

-75

p

0.966

NM_013935

Ptpla

2

CCGAGGTGGC

CCCGGCTGGC

CCCACCCCGG

CCGGGGTGGG

CCGGGGCGGG

CCCGCCCCGG

CCCGGCCGCG

CCGGCCTCCC

CCGAGGCGGC

CTCAGCCGGC

-308
-149
-140
-140
-93
-93
-80
-50
4
44

n

p

p

n

p

n

n

n

p

p

0.958
0.979
0.957
0.952
0.930
0.948
0.944
0.937
0.935
0.949

NM_012029

Sitpec

2

CCCAGCTGAG

CTCAGCTGGG

CCGAGCCGGC

CTCACGTGGC

CCCACGCGCG

-508

-508

27

48

67

p

n

n

n

n

0.973

0.976

0.951

0.964

0.945

NM_011724

2

CCCACCTGGG

CCCAGGTGGG

CTGGGCTGGG

CCCAGCCCAG

CCCACCCCAG

CTGGGGTGGG

-884

-884

-599

-599

-196

-196

p

n

p

n

p

n

1.000

0.976

0.952

0.930

0.938

0.936

NM_011694

Vdac1

2

CCCGCGTGAC

CCCGCGTGCG

CTGACGTGCG

-712

-536

-263

p

n

n

0.952

0.959

0.937

NM_011099

Pkm2

2

CTGGGCTGCC

CCGGGCTGCG

CCGAGGTGAG

CTCACCTCGG

-567

-89

70

70

n

n

p

n

0.933

0.953

0.943

0.964

NM_011079

Phkg1

2

CTGGCCTGCC

-18

n

0.941

NM_010866

Myod1

2

CTGGCCTGAC

CTGACCTCGG

CTGACCTCAG

-890

-323

-299

n

n

n

0.938

0.949

0.931

NM_010834

Gdf8

2

CTGGCGTGGC

8

p

0.941

NM_010596

Kcna7

2

CCCGCCTGGC

-781

p

0.987

NM_010434

Hipk3

2

CCCGGGCGGC

CCGGGCTCGG

CCGAGCCCGG

CCGGCCTCGG

CCCGGGTGAC

-96

-91

-91

-37

21

n

p

n

n

p

0.940

0.948

0.935

0.957

0.944

NM_009427

Tob1

2

CCCGCCTGCC

CCCGGCCGCG

CCCACCCGGC

CTGGCCCGGC

CCCGCCCGAG

CCCACCCGCG

CCCAGCCGCG

CCGAGCCGCG

CCGGGCTCGC

CCGGGGTGGG

CCCACCCCGG

CCGGGCCGCG

-954
-901
-887
-768
-639
-569
-532
-526
-438
-329
-329
-138

n

n

n

p

p

p

p

n

n

p

n

p

0.971
0.944
0.974
0.934
0.949
0.961
0.953
0.939
0.945
0.952
0.957
0.930

NM_009415

Tpi1

2

CTGAGGTGGG

CCCACCTCAG

-462

-462

p

n

0.945

0.961

NM_009405

Tnni2

2

CCCGGCTCAC

CTGGGCTGAC

CTGGGCTGAC

CCCAGCCGCC

CTGGGCCGGG

CCGGCCTGAC

CTGACCTCGC

-868

-468

-150

-134

-51

10

15

n

n

p

n

n

p

p

0.940

0.930

0.930

0.950

0.930

0.954

0.946

NM_009323

Tbx15

2

CCCGGGTGGG

CCCACCCGGG

CCCAGCTGCC

CCGACCCGGC

CTGAGCTGGC

CCCGGGTGCG

-188

-188

-109

12

52

81

p

n

n

n

n

p

0.967

0.977

0.972

0.960

0.958

0.951

NM_009228

Snta1

2

CCCGCCCCCG

CCCGCCCCCG

CCGGCCTCGG

CCCGGCCCGC

-68

-53

-17

52

p

p

n

n

0.932

0.932

0.957

0.936

NM_009204

Slc2a4

2

CTGGGGTGGC

CCCACGCGGC

CCCGCCTGGG

CCCAGGCGGG

CCCGCCCCGC

-983

-773

-494

-494

-63

n

p

p

n

n

0.933

0.957

0.991

0.953

0.944

NM_009107

Rxrg

2

CCCAGCCCCC

-940

p

0.929

NM_008830

Abcb4

2

CCCGCCTCAC

CTCGCCCGGG

CCCGGGTGGG

CCCACCCGGG

-522

-54

-50

-50

n

p

p

n

0.948

0.952

0.967

0.977

NM_008733

Nrap

2

CTGAGCTGAG

CTCAGCTCAG

15

15

p

n

0.943

0.937

NM_008664

Myom2

2

CCCACCTGAG

CTCAGGTGGG

-906

-906

p

n

0.981

0.959

NM_008155

Gpi1

2

CCCACCCCAC

CCCACCCCAC

CCGGCCCCGC

CCCGCCTCCG

CCCGCCCCGC

CCGACCCCGC

-784

-749

-90

-83

-78

-73

n

n

n

n

n

n

0.935

0.935

0.930

0.955

0.944

0.939

NM_007710

Ckm

2

CCCACCCCCG

CCGGGGTGGG

CCCACCCCGG

CTGGGGTGGG

CCCACCCCAG

-841

-136

-136

74

74

p

p

n

p

n

0.941

0.952

0.957

0.936

0.938

NM_007688

Cfl2

2

CCCGCCCCCG

CCCGCCCCGC

CCCGCCCGCC

CCCGCCCGCC

CCCGCCCGGC

CCGGCGTGCC

-63

-33

-28

3

7

25

n

p

p

p

p

p

0.932

0.944

0.948

0.948

0.964

0.941

NM_007601

Capn3

2

CCCAGGTCCC

48

p

0.936

NM_007582

Cacng1

2

CCCACCTCCC

CCCAGCTCCG

-514

37

n

p

0.960

0.956

NM_020033

Ankrd2

1

CTCGGGTGCC

CCCAGGCGAG

CTCGCCTGGG

CCCACCCCGC

CTGAGGTGGG

CCCACCTCAG

-889

-792

-792

-50

90

90

p

p

n

n

p

n

0.931

0.934

0.975

0.953

0.945

0.961