DWE: Discriminating Word Enumerator

README

DWE for tuples (cooperating motifs)

Motif structure

example: XX.X..X (gaps length 1&2) or XXX (no gaps)

Foreground sequences

Please paste your sequences here (multi-FASTA format):

or upload a sequence file:

Background sequences

Please paste your sequences here (multi-FASTA format):

or upload a sequence file:

Options

Include reverse complement strand:
Counting method:
Allow overlapping motifs:
Max number of degenerate positions:

Reporting thresholds

Fisher's test p-value:
Log frequency ratio:
Z-score:

Output

Sort by: Fisher's test p-value Z-score Log frequency ratio

Remove dependent words:
If yes, please specify the following:

 

Gengxin Chen
Last modified: Fri Jun 25 12:11:28 EDT 2004